Most canopies sit on top of the tub and mount either by several bolts screwed into the inside top lip or via a "J bolt" type system both require flush access to the lip of the top rail and the J bolt requires access to hook under the top lip. Anything mounted on that top lip will need to be removed so it will depend how your tarp mounts.
FWIW I wouldn't buy a new Nissan canopy, if you really want the ones Nissan sell (and different Nissan dealers sell different factory models) then find out who the maker is and buy it from them you'll save a fortune. I believe most dealers use either Carryboy or like my local they use ARB but these threads are littered with people who've brought Nissan canopies and know what brand they are.